Index _ | A | B | C | D | E | F | G | I | K | L | M | N | O | P | Q | R | S | T | U | V | X | Y | Z _ __call__() (pyrost.bin.FFTW method) A AberrationsFit (class in pyrost) axes (pyrost.bin.FFTW attribute) B backward_points() (pyrost.ComposeTransforms method) (pyrost.Crop method) (pyrost.Downscale method) (pyrost.Mirror method) bar_positions() (in module pyrost.bin) (pyrost.simulation.STParams method) barcode_profile() (in module pyrost.bin) (pyrost.simulation.STParams method) beam_downstream() (pyrost.multislice.MSPropagator method) beam_propagate() (pyrost.multislice.MSPropagator method) beam_span() (pyrost.simulation.STParams method) BFGS (class in pyrost) C cast() (pyrost.CXIProtocol method) clear() (pyrost.STData method) close() (pyrost.CXIStore method) ComposeTransforms (class in pyrost) contents() (pyrost.AberrationsFit method) (pyrost.ComposeTransforms method) (pyrost.Crop method) (pyrost.CXIProtocol method) (pyrost.Downscale method) (pyrost.KamzikConverter method) (pyrost.LogProtocol method) (pyrost.Mirror method) (pyrost.multislice.MSParams method) (pyrost.simulation.STConverter method) (pyrost.simulation.STParams method) (pyrost.STData method) create_initial() (pyrost.SpeckleTracking method) Crop (class in pyrost) crop_data() (pyrost.AberrationsFit method) ct_integrate() (in module pyrost.bin) CV() (pyrost.SpeckleTracking method) CV_curve() (pyrost.SpeckleTracking method) cxi_get() (pyrost.KamzikConverter method) cxi_keys() (pyrost.KamzikConverter method) CXIProtocol (class in pyrost) CXIStore (class in pyrost) D D (in module pyrost.data_container) defocus_sweep() (pyrost.STData method) density (pyrost.multislice.Material attribute) direction (pyrost.bin.FFTW attribute) Downscale (class in pyrost) E elements (pyrost.multislice.Material attribute) empty_aligned() (in module pyrost.bin) error_profile() (pyrost.SpeckleTracking method) execute() (pyrost.bin.FFTW method) export_data() (pyrost.simulation.STConverter method) export_dict() (pyrost.multislice.Material method) F fft_convolve() (in module pyrost.bin) FFTW (class in pyrost.bin) file (pyrost.CXIStore attribute) file_dict (pyrost.CXIStore attribute) filenames() (pyrost.CXIStore method) files() (pyrost.CXIStore method) find_beam_roi() (pyrost.simulation.STSim method) find_dataset() (pyrost.CXIStore method) find_hopt() (pyrost.SpeckleTracking method) find_log_attribute() (pyrost.KamzikConverter method) find_log_dataset() (pyrost.KamzikConverter method) find_log_part_key() (pyrost.KamzikConverter method) find_path() (pyrost.CXIProtocol method) fit() (pyrost.AberrationsFit method) fit_phase() (pyrost.AberrationsFit method) (pyrost.STData method) flags (pyrost.bin.FFTW attribute) forward() (pyrost.ComposeTransforms method) (pyrost.Crop method) (pyrost.Downscale method) (pyrost.Mirror method) (pyrost.Transform method) forward_points() (pyrost.ComposeTransforms method) (pyrost.Crop method) (pyrost.Downscale method) (pyrost.Mirror method) frames() (pyrost.simulation.STSim method) fraunhofer_wp() (in module pyrost.bin) G gaussian_filter() (in module pyrost.bin) gaussian_gradient_magnitude() (in module pyrost.bin) generate_sample() (pyrost.multislice.MSPropagator method) get() (pyrost.AberrationsFit method) (pyrost.ComposeTransforms method) (pyrost.Crop method) (pyrost.CXIProtocol method) (pyrost.Downscale method) (pyrost.KamzikConverter method) (pyrost.LogProtocol method) (pyrost.Mirror method) (pyrost.multislice.MSParams method) (pyrost.simulation.STConverter method) (pyrost.simulation.STParams method) (pyrost.STData method) get_absorption_coefficient() (pyrost.multislice.Material method) get_dtype() (pyrost.CXIProtocol method) get_fit() (pyrost.STData method) get_kernel() (pyrost.multislice.MSParams method) get_kind() (pyrost.CXIProtocol method) get_load_paths() (pyrost.CXIProtocol method) get_mat1_r() (pyrost.multislice.MSParams method) get_mat2_r() (pyrost.multislice.MSParams method) get_ndim() (pyrost.CXIProtocol method) get_pca() (pyrost.STData method) get_profile() (pyrost.multislice.MLL method) get_ref_index() (pyrost.multislice.Material method) get_sf() (pyrost.multislice.Material method) get_span() (pyrost.multislice.MLL method) get_st() (pyrost.STData method) get_transform() (pyrost.simulation.STConverter method) get_wavefront_size() (pyrost.multislice.MSParams method) get_xcoords() (pyrost.multislice.MSParams method) get_zcoords() (pyrost.multislice.MSParams method) grad() (pyrost.BFGS method) I I (in module pyrost.data_container) import_default() (pyrost.CXIProtocol class method) (pyrost.LogProtocol class method) (pyrost.multislice.MSParams class method) (pyrost.simulation.STParams class method) import_ini() (pyrost.CXIProtocol class method) (pyrost.LogProtocol class method) (pyrost.multislice.MSParams class method) (pyrost.simulation.STParams class method) import_params() (pyrost.multislice.MLL class method) import_st() (pyrost.STData method) index_array() (pyrost.ComposeTransforms method) (pyrost.Crop method) (pyrost.Downscale method) (pyrost.Mirror method) indices() (pyrost.CXIStore method) input_array (pyrost.bin.FFTW attribute) integrate_data() (pyrost.STData method) items() (pyrost.AberrationsFit method) (pyrost.ComposeTransforms method) (pyrost.Crop method) (pyrost.CXIProtocol method) (pyrost.CXIStore method) (pyrost.Downscale method) (pyrost.KamzikConverter method) (pyrost.LogProtocol method) (pyrost.Mirror method) (pyrost.multislice.MSParams method) (pyrost.simulation.STConverter method) (pyrost.simulation.STParams method) (pyrost.STData method) K K (in module pyrost.log_protocol) KamzikConverter (class in pyrost) keys() (pyrost.AberrationsFit method) (pyrost.ComposeTransforms method) (pyrost.Crop method) (pyrost.CXIProtocol method) (pyrost.CXIStore method) (pyrost.Downscale method) (pyrost.KamzikConverter method) (pyrost.LogProtocol method) (pyrost.Mirror method) (pyrost.multislice.MSParams method) (pyrost.simulation.STConverter method) (pyrost.simulation.STParams method) (pyrost.STData method) KR_reference() (in module pyrost.bin) L lens_x_wavefront() (pyrost.simulation.STParams method) lens_y_wavefront() (pyrost.simulation.STParams method) load() (pyrost.STData method) load_attribute() (pyrost.CXIStore method) load_attributes() (pyrost.LogProtocol method) load_data() (pyrost.LogProtocol method) LogProtocol (class in pyrost) loss() (pyrost.BFGS method) LOWESS_reference() (in module pyrost.bin) M make_frames() (in module pyrost.bin) mask_frames() (pyrost.STData method) mass (pyrost.multislice.Material attribute) Material (class in pyrost.multislice) median() (in module pyrost.bin) Mirror (class in pyrost) MLL (class in pyrost.multislice) mode (pyrost.CXIStore attribute) model() (pyrost.AberrationsFit method) module pyrost.aberrations_fit pyrost.cxi_protocol pyrost.multislice.ms_parameters pyrost.multislice.mslice pyrost.simulation.st_parameters pyrost.simulation.st_sim MSParams (class in pyrost.multislice) MSPropagator (class in pyrost.multislice) N n_slices (pyrost.multislice.MLL property) name (pyrost.multislice.Material attribute) normalize_idft (pyrost.bin.FFTW attribute) O ones_aligned() (in module pyrost.bin) open() (pyrost.CXIStore method) ortho (pyrost.bin.FFTW attribute) output_array (pyrost.bin.FFTW attribute) P phase_to_pix() (pyrost.AberrationsFit method) pix_to_phase() (pyrost.AberrationsFit method) pixel_map() (pyrost.STData method) pm_devolution() (in module pyrost.bin) pm_errors() (in module pyrost.bin) pm_gsearch() (in module pyrost.bin) pm_rsearch() (in module pyrost.bin) pm_total_error() (in module pyrost.bin) protocol (pyrost.CXIStore attribute) ptychograph() (pyrost.simulation.STSim method) pyrost.aberrations_fit module pyrost.cxi_protocol module pyrost.multislice.ms_parameters module pyrost.multislice.mslice module pyrost.simulation.st_parameters module pyrost.simulation.st_sim module Q quantities (pyrost.multislice.Material attribute) R read_attribute_indices() (pyrost.CXIProtocol method) read_attribute_shapes() (pyrost.CXIProtocol method) read_dataset_shapes() (pyrost.CXIProtocol static method) read_logs() (pyrost.KamzikConverter method) read_shape() (pyrost.CXIStore method) ref_errors() (in module pyrost.bin) ref_indices() (pyrost.SpeckleTracking method) ref_total_error() (in module pyrost.bin) ReferenceType (class in pyrost.data_container) remove_linear_term() (pyrost.AberrationsFit method) replace() (pyrost.AberrationsFit method) (pyrost.ComposeTransforms method) (pyrost.Crop method) (pyrost.CXIProtocol method) (pyrost.Downscale method) (pyrost.KamzikConverter method) (pyrost.LogProtocol method) (pyrost.Mirror method) (pyrost.multislice.MSParams method) (pyrost.simulation.STConverter method) (pyrost.simulation.STParams method) (pyrost.STData method) rsc_wp() (in module pyrost.bin) S S (in module pyrost.data_processing) sample_positions() (pyrost.simulation.STParams method) save() (pyrost.simulation.STConverter method) (pyrost.STData method) save_attribute() (pyrost.CXIStore method) size (pyrost.multislice.MSPropagator property) source_curve() (pyrost.simulation.STParams method) SpeckleTracking (class in pyrost) state_dict() (pyrost.BFGS method) STConverter (class in pyrost.simulation) STData (class in pyrost) step() (pyrost.BFGS method) STParams (class in pyrost.simulation) str_to_list() (pyrost.CXIProtocol static method) (pyrost.LogProtocol static method) (pyrost.multislice.MSParams static method) (pyrost.simulation.STParams static method) STSim (class in pyrost.simulation) T test_train_split() (pyrost.SpeckleTracking method) to_ini() (pyrost.CXIProtocol method) (pyrost.LogProtocol method) (pyrost.multislice.MSParams method) (pyrost.simulation.STParams method) tr_gsearch() (in module pyrost.bin) train() (pyrost.SpeckleTracking method) train_adapt() (pyrost.SpeckleTracking method) Transform (class in pyrost) U update_arrays() (pyrost.bin.FFTW method) update_bars() (pyrost.simulation.STSim method) update_center() (pyrost.AberrationsFit method) update_defocus() (pyrost.STData method) update_errors() (pyrost.SpeckleTracking method) update_inc_wavefront() (pyrost.multislice.MSPropagator method) update_indices() (pyrost.CXIStore method) update_interdiffusion() (pyrost.multislice.MLL method) update_loss() (pyrost.BFGS method) update_mask() (pyrost.STData method) update_materials() (pyrost.multislice.MLL method) update_output_file() (pyrost.STData method) update_phase() (pyrost.AberrationsFit method) update_pixel_map() (pyrost.SpeckleTracking method) update_reference() (pyrost.SpeckleTracking method) update_roi() (pyrost.simulation.STSim method) update_seed() (pyrost.simulation.STParams method) update_threads() (pyrost.simulation.STParams method) update_transform() (pyrost.STData method) update_translations() (pyrost.SpeckleTracking method) update_whitefield() (pyrost.STData method) update_whitefields() (pyrost.STData method) V values() (pyrost.AberrationsFit method) (pyrost.ComposeTransforms method) (pyrost.Crop method) (pyrost.CXIProtocol method) (pyrost.CXIStore method) (pyrost.Downscale method) (pyrost.KamzikConverter method) (pyrost.LogProtocol method) (pyrost.Mirror method) (pyrost.multislice.MSParams method) (pyrost.simulation.STConverter method) (pyrost.simulation.STParams method) (pyrost.STData method) X x_wavefront_size() (pyrost.simulation.STParams method) Y y_wavefront_size() (pyrost.simulation.STParams method) Z zeros_aligned() (in module pyrost.bin)