Installation¶
Dependencies¶
pyrost has the following mandatory runtime dependencies:
Python 3.6 or later (Python 2.x is not supported).
GNU Scientific Library 2.4 or later, which is used for numerical integration and pseudo-random number generation.
LLVM’s OpenMP library 10.0.0 or later, which is used for parallelization.
h5py 2.10.0 or later, which is used to work with CXI files.
NumPy 1.19.0 or later.
SciPy 1.5.2 or later.
Packages¶
pyrost packages are available through pypi and conda on OS X and Linux platforms.
conda¶
pyrost binary distribution is available via the conda package manager for Linux and OSX (Windows is not supported)in conda-forge channel. In order to install pyrost via conda, you just need to add conda-forge to the channels, and install as following:
$ conda config --add channels conda-forge
$ conda config --set channel_priority strict
$ conda install pyrost
The conda packages for pyrost are regularly updated when a new version is released.
Installation from source¶
In order to install pyrost from source you will need:
a C++ compiler (gcc or clang will do).
Python 3.6 or later (Python 2.x is not supported).
GNU Scientific Library 2.4 or later, which is used for numerical integration and pseudo-random number generation.
LLVM’s OpenMP library 10.0.0 or later, which is used for parallelization.
Cython 0.29 or later.
NumPy 1.19.0 or later.
After installing the dependencies, you can download the the source code from
the GitHub pyrost repository page.
Or you can download the last version of pyrost repository with git:
$ git clone https://github.com/simply-nicky/pyrost.git
After downloading the pyrost’s source code, cd into the repository root folder
and build the C++ libraries using setuputils:
$ cd pyrost
$ python setup.py install
OR
$ pip install -r requirements.txt -e . -v